miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|125505047|gb|EL527650.1|EL527650 TGGGGAGAACGGGCGCTTTGCCAGGTATCGGTATTTCGCCCACGCGAAGATCAACGACTCGGACTTCCTGATGATCACAA
AGAGGGGGGTCTTCTTCGTGACCAGGGGCACGTTCGGCCAGCTCACCTGTGAGTGGCAGTACCTCTTCGACGAGTTCACC
AAGGAGCCAATGATCGTGGAGGGGCGGAGACTTCGCATCGAGGCCAAGGAGAGAGTAAAATCAGTGTTTCATGCCAAAGA
GTTTGGGAAGATCATCAACTTCAAGACTCCTGATATTGCCAAGTGGGTTCTTTGCAAACTCGAGGACGCCAGAGAGAGTT
TGCCCAAATACTGACAGCTCAGCCTGAACACTACAAGAAGGGATCAACACACAGTAATTCTGACACACACACAGACAGAG
TGCTCCGGTGTGTCAGTGCCTTTTCCCCCTGCATGATGTACAGTACTGCACCAGTGACTGGTTGTACAAACGACTATAGT
TCTGCCATAGACTGTTAGTGCGTGTGTGTGTGCGCATGTGTGTGTGTGTGTGTTGTGGATTAAGGGAATAGGGTGTGCCT
GTATCATTATACTTATTGTAAGGGAACAAGTAGTCATGTGCTCCACTAATGCATAAATCTGTAGTCTTAACACACACGCA
CACACACACCCAGAACGGCACTTACCGGCGGTCAAGTTACCAGCTGCTTTTAACGTGTGGTGGAACAGCCTGACCTCTCT
CTCACAGGCCGGTTTGTTTCACCGGGAAGGTGACCCTCACCCCCCCTCCATCCTCTACTCCCTGTGTTTTTCACATCCTC
CTGCGACACAAGACTGTTCCGTGACGAAGAGTGGCATGCTATTTTTTC




Most similar to sp|Q5H8C4|VP13A_MOUSE

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q5H8C4|VP13A_MOUSE Vacuolar protein sorting-associated protein 13A
            OS=Mus musculus GN=Vps13a PE=1 SV=1
          Length = 3166

 Score =  182 bits (462), Expect = 3e-45
 Identities = 83/108 (76%), Positives = 94/108 (87%)
 Frame = +2

Query: 5    ENGRFARYRYFAHAKINDSDFLMITKRGVFFVTRGTFGQLTCEWQYLFDEFTKEPMIVEG 184
            ENGRFA+Y+YF H  IN +D  MIT+RGV FVT+GTFGQLTCEWQY FDEFTKEP IV G
Sbjct: 3058 ENGRFAKYKYFTHVMINKTDMFMITRRGVLFVTKGTFGQLTCEWQYTFDEFTKEPFIVHG 3117

Query: 185  RRLRIEAKERVKSVFHAKEFGKIINFKTPDIAKWVLCKLEDARESLPK 328
            RRLRIEAKERVKSVFHAKEFGKI+NFKTP+ A+W+L KLE+ARE  P+
Sbjct: 3118 RRLRIEAKERVKSVFHAKEFGKIVNFKTPEDARWILTKLEEAREPSPR 3165